Courses

Data Science

  • Introduction to Data Science with R (40 hours materials, optative course);
    Both postgraduate programs, CINVESTAV Irapuato, Mexico [2018].

    • section 1: Data mining and preprocessing section 2: Exploratory data analysis
    section 3: Unsupervised learning
    section 4: Supervised learning (1/2)
    section 5: Supervised learning (2/2)
    section 6: Neural networks
    section 7: Text mining
    section 8: Data visualization
    Data Science Team Challenge


Chemical Biology, Chemoinformatics & Bioinformatics

  • Multidisciplinary Scientific Reasoning Course, Chemical Biology, Module 1 (8 hours);
    Integrative Biology postgraduate program, CINVESTAV Irapuato, Mexico [2019-2023].

    • Concepts of chemistry and thermodynamics
    Metabolism: regulation
    Structure and function of macromolecules - peptides and proteins
    Introduction to enzyme kinetics
    Analytical methods


  • Multidisciplinary Scientific Reasoning Course, Chemical Biology, Module 2 (6 hours);
    Integrative Biology postgraduate program, CINVESTAV Irapuato, Mexico. [2020-2023]

    • Chemoinformatics - definitions and applications
    Encoding molecules - molecular representations
    Databases and Chemical Space
    Computer-Aided Drug Design: ligand-based and structure-based approaches
    Practice: Docking / Virtual Screening challenge


  • Multidisciplinary Scientific Reasoning Course, Computational Biology, Module 2 (10 hours);
    Integrative Biology postgraduate program, CINVESTAV Irapuato, Mexico. [2020-2023]
    Bachelor in Genomic Sciences, LIIGH, ENES-UNAM Queretaro, Mexico. [2020-2024]
    Plant Biotechnology postgraduate program, CINVESTAV Irapuato, Mexico. [2021-2023]

    • Introduction to Structural Bioinformatics
    Homology / Comparative modeling
    Tutorial: Comparative modeling with Rosetta
    Ab initio / De novo modeling
    Tutorial: Ab initio modeling with Rosetta
    AlphaFold2 in details
    Protein Structure Prediction with AlphaFold2
    Computational Protein Design


General

  • Multidisciplinary Scientific Reasoning Course, Scientific Writing, Module 3 (7 hours);
    Integrative Biology Postgraduate program, CINVESTAV Irapuato, Mexico [2020-2023].



Workshops